This workflow retrieves the EMBL record and HGVBASE records associated with a given Affymetrix probe set Id. The SNP location, SNP nucleotide and the HGVBASE database reference is extracted from the HGVBASE record and inserted into the EMBL record as a variation feature. The results from probe set Id, 1064_at, are: -1 outfile_emblEntryWithSNPs org.w3c.dom.Element ID HS02680 standard; RNA; HUM; 3000 BP. XX AC U02680; XX SV U02680.1 XX DT 04-FEB-1994 (Rel. 38, Created) DT 30-JUN-1999 (Rel. 60, Last updated, Version 2) XX DE Human protein tyrosine kinase mRNA, complete cds. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Primates; Catarrhini; Hominidae; Homo. XX FH Key Location/Qualifiers FT source 1..3000 FT /cell_line="M426" FT /cell_type="fibroblast" FT /clone="Beta-gal-A6" FT /clone_lib="M426" FT /db_xref="taxon:9606" FT /dev_stage="embryo" FT /organism="Homo sapiens" FT /tissue_type="lung" FT CDS 61..1113 FT /codon_start=1 FT /db_xref="GOA:Q12792" FT /db_xref="SPTREMBL:Q12792" FT /product="protein tyrosine kinase" FT /protein_id="AAC50062.1" FT /translation="MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQP FT SDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAAT FT RATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQ FT TDVGVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTEL FT KDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLE FT IVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIR FT GPAETEATTD" FT variation 135 FT /db_xref="HGBASE:SNP000010197" FT /note="SNP" FT /replace="a" FT variation 323 FT /db_xref="HGBASE:SNP000010203" FT /note="SNP" FT /replace="t" FT variation 1372 FT /db_xref="HGBASE:SNP000010198" FT /note="SNP" FT /replace="g" FT variation 2546 FT /db_xref="HGBASE:SNP000010200" FT /note="SNP" FT /replace="c" FT variation 2679 FT /db_xref="HGBASE:SNP000010202" FT /note="SNP" FT /replace="a" FT variation 2702 FT /db_xref="HGBASE:SNP000010199" FT /note="SNP" FT /replace="t" FT variation 2720 FT /db_xref="HGBASE:SNP000010201" FT /note="SNP" FT /replace="g" XX SQ Sequence 3000 BP; 1019 A; 500 C; 550 G; 931 T; 0 other; ccgccggccg gggcgcctgg ctgcactcag cgccggagcc gggagctagc ggccgccgcc 60 atgtcccacc agaccggcat ccaagcaagt gaagatgtta aagagatctt tgccagagcc 120 agaaatggaa agtacagact tctgaaaata tctattgaaa atgagcaact tgtgattgga 180 tcatatagtc agccttcaga ttcctgggat aaggattatg attcctttgt tttacccctg 240 ttggaggaca aacaaccatg ctatatatta ttcaggttag attctcagaa tgcccaggga 300 tatgaatgga tattcattgc atggtctcca gatcattctc atgttcgtca aaaaatgttg 360 tatgcagcaa caagagcaac tctgaagaag gaatttggag gtggccacat taaagatgaa 420 gtatttggaa cagtaaagga agatgtatca ttacatggat ataaaaaata cttgctgtca 480 caatcttccc ctgccccact gactgcagct gaggaagaac tacgacagat taaaatcaat 540 gaggtacaga ctgacgtggg tgtggacact aagcatcaaa cactacaagg agtagcattt 600 cccatttctc gagaagcctt tcaggctttg gaaaaattga ataatagaca gctcaactat 660 gtgcagttgg aaatagatat aaaaaatgaa attataattt tggccaacac aacaaataca 720 gaactgaaag atttgccaaa gaggattccc aaggattcag ctcgttacca tttctttctg 780 tataaacatt cccatgaagg agactattta gagtccatag tttttattta ttcaatgcct 840 ggatacacat gcagtataag agagcggatg ctgtattcta gctgcaagag ccgtctgcta 900 gaaattgtag aaagacaact acaaatggat gtaattagaa agatcgagat agacaatggg 960 gatgagttga ctgcagactt cctttatgaa gaagtacatc ccaagcagca tgcacacaag 1020 caaagttttg caaaaccaaa aggtcctgca ggaaaaagag gaattcgaag actaattagg 1080 ggcccagcgg aaactgaagc tactactgat taaagtcatc acattaaaca ttgtaatact 1140 agttttttaa aagtccagct tttagtacag gagaactgaa atcattccat gttgatataa 1200 agtagggaaa aaaattgtac tttttggaaa atagcacttt tcacttctgt gtgtttttaa 1260 aattaatgtt atagaagact catgatttct atttttgagt taaagctaga aaagggttca 1320 acataatgtt taattttgtc acactgtttt catagcgttg attccacact tcaaatactt 1380 cttaaaattt tatacagttg ggccagttct agaaagtctg atgtctcaaa gggtaaactt 1440 actactttct tgtgggacag aaagacctta aaatattcat attacttaat gaatatgtta 1500 aggaccaggc tagagtattt tctaagctgg aaacttagtg tgccttggaa aagccgcaag 1560 ttgcttactc cgagtagctg tgctagctct gtcagactgt aggatcatgt ctgcaacttt 1620 tagaaatagt gctttatatt gcagcagtct tttatatttg actttttttt aatagcatta 1680 aaattgcaga tcagctcact ctgaaacttt aagggtacca gatattttct atactgcagg 1740 atttctgatg acattgaaag actttaaaca gccttagtaa attatctttc taatgctctg 1800 tgaggccaaa catttatgtt cagattgaaa tttaaattaa tatcattcaa aaggaaacaa 1860 aaaatgttga gttttaaaaa tcaggattga cttttttctc caaaaccata catttatggg 1920 caaattgtgt tctttatcac ttccgagcaa atactcagat ttaaaattac tttaaagtcc 1980 tggtacttaa caggctaacg tagataaaca ccttaataat ctcagttaat actgtatttc 2040 aaaacacatt taactgtttt ctaatgcttt gcattatcag ttacaaccta gagagatttt 2100 gagcctcata tttctttgat acttgaaata gagggagcta gaacacttaa tgtttaatct 2160 gttaaacctg ctgcaagagc cataactttg aggcattttc taaatgaact gtggggatcc 2220 aggatttgta atttcttgat ctaaacttta tgctgcataa atcacttatc ggaaatgcac 2280 atttcatagt gtgaagcact catttctaaa ccttattatc taaggtaata tatgcacctt 2340 tcagaaattt gtgttcgagt aagtaaagca tattagaata attgtgggtt gacagatttt 2400 taaaatagaa tttagagtat ttggggtttt gtttgtttac aaataatcag actataatat 2460 ttaaacatgc aaaataactg acaataatgt tgcacttgtt tactaaagat ataagttgtt 2520 ccatgggtgt acacgtagac agacacacat acacccaaat tattgcatta agaatcctgg 2580 agcagaccat agctgaagct gttattttca gtcaggaaga ctacctgtca tgaaggtata 2640 aaataattta gaagtgaatg tttttctgta ccatctatgt gcaattatac tctaaattcc 2700 actacactac attaaagtaa atggacattc cagaatatag atgtgattat agtcttaaac 2760 taattattat taaaccaatg attgctgaaa atcagtgatg catttgttat agagtataac 2820 tcatcgttta cagtatgttt tagttggcag tatcatacct agatggtgaa taacatattc 2880 ccagtaaatt tatatagcag tgaagaatta catgccttct ggtggacatt ttataagtgc 2940 attttatatc acaataaaaa ttttttctct ttaaaaaaaa aaaacaagaa aaaaaaaaaa 3000 // ]]>